HL_9MKK_080

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9MKK|1|a|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MKK_080 not in the Motif Atlas

Geometric match to HL_5J7L_192

Geometric discrepancy: 0.128

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9MKK|1|a|U|2404
9MKK|1|a|G|2405
9MKK|1|a|A|2406
9MKK|1|a|A|2407
9MKK|1|a|U|2408
9MKK|1|a|G|2409
9MKK|1|a|G|2410
9MKK|1|a|A|2411
9MKK|1|a|A|2412
9MKK|1|a|G|2413

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15