HL_9MKK_082

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9MKK|1|a|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MKK_082 not in the Motif Atlas

Geometric match to HL_4WF9_057

Geometric discrepancy: 0.1727

The information below is about HL_4WF9_057

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9MKK|1|a|U|2528
9MKK|1|a|G|2529
9MKK|1|a|A|2530
9MKK|1|a|A|2531
9MKK|1|a|G|2532
9MKK|1|a|U|2533
9MKK|1|a|A|2534
9MKK|1|a|G|2535

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

Large ribosomal subunit protein uL6