HL_9MQ4_029

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MQ4_029 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.2233

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

9MQ4|1|1|C|1092
9MQ4|1|1|G|1093
9MQ4|1|1|U|1094
9MQ4|1|1|A|1095
9MQ4|1|1|A|1096
9MQ4|1|1|U|1097
9MQ4|1|1|A|1098
9MQ4|1|1|G|1099

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

Large ribosomal subunit protein uL6

Chain I

50S ribosomal protein L11

Chain f

50S ribosomal protein L36