3D structure

PDB id
9MTP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
UUUACCAAAAA
Length
11 nucleotides
Bulged bases
9MTP|1|1A|A|1780, 9MTP|1|1A|C|1781, 9MTP|1|1A|C|1782, 9MTP|1|1A|A|1786
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9MTP_043 not in the Motif Atlas
Geometric match to HL_9DFE_043
Geometric discrepancy: 0.048
The information below is about HL_9DFE_043
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_01962.2
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

9MTP|1|1A|U|1777
9MTP|1|1A|U|1778
9MTP|1|1A|U|1779
9MTP|1|1A|A|1780
9MTP|1|1A|C|1781
9MTP|1|1A|C|1782
9MTP|1|1A|A|1783
9MTP|1|1A|A|1784
9MTP|1|1A|A|1785
9MTP|1|1A|A|1786
9MTP|1|1A|A|1787

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 17
50S ribosomal protein L34
Chain 1D
50S ribosomal protein L2
Chain 1W
50S ribosomal protein L22
Chain 1z
P-site Peptidyl-tRNA fMEAAAKC-tRNAcys Peptide-part

Coloring options:


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