HL_9MTR_143

3D structure

PDB id

9MTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

9MTR|1|2A|A|1780, 9MTR|1|2A|C|1781, 9MTR|1|2A|C|1782, 9MTR|1|2A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTR_143 not in the Motif Atlas

Geometric match to HL_9DFE_043

Geometric discrepancy: 0.0684

The information below is about HL_9DFE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9MTR|1|2A|U|1777
9MTR|1|2A|U|1778
9MTR|1|2A|U|1779
9MTR|1|2A|A|1780
9MTR|1|2A|C|1781
9MTR|1|2A|C|1782
9MTR|1|2A|A|1783
9MTR|1|2A|A|1784
9MTR|1|2A|A|1785
9MTR|1|2A|A|1786
9MTR|1|2A|A|1787

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2

Chain 2W

50S ribosomal protein L22