HL_9N2B_017
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 9N2B|1|16|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9N2B_017 not in the Motif Atlas
- Homologous match to HL_5J7L_017
- Geometric discrepancy: 0.0849
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9N2B|1|16|G|786
9N2B|1|16|A|787
9N2B|1|16|U|788
9N2B|1|16|U|789
9N2B|1|16|A|790
9N2B|1|16|G|791
9N2B|1|16|A|792
9N2B|1|16|U|793
9N2B|1|16|A|794
9N2B|1|16|C|795
9N2B|1|16|C|796
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain 23
- Large subunit ribosomal RNA; LSU rRNA
- Chain Pt
- Transfer RNA; tRNA
- Chain SK
- Small ribosomal subunit protein uS11
- Chain SU
- 30S ribosomal protein S21
- Chain mR
- Synthetic messenger RNA (mRNA) 60 bp in length
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