HL_9N2C_071

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

9N2C|1|23|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2C_071 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.0615

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9N2C|1|23|A|1630
9N2C|1|23|G|1631
9N2C|1|23|A|1632
9N2C|1|23|G|1633
9N2C|1|23|A|1634
9N2C|1|23|A|1635
9N2C|1|23|U|1636

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains