HL_9N3I_004

3D structure

PDB id

9N3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vibrio cholerae Glycine Riboswitch - glycine bound at 2.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUUUAAUC

Length

8 nucleotides

Bulged bases

9N3I|1|A|A|163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N3I_004 not in the Motif Atlas

Geometric match to HL_3R4F_001

Geometric discrepancy: 0.296

The information below is about HL_3R4F_001

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.4

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

9N3I|1|A|G|158
9N3I|1|A|U|159
9N3I|1|A|U|160
9N3I|1|A|U|161
9N3I|1|A|A|162
9N3I|1|A|A|163
9N3I|1|A|U|164
9N3I|1|A|C|165

Current chains

Chain A

Glycine Riboswitch

Nearby chains