HL_9N70_005

3D structure

PDB id

9N70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State E

Experimental method

ELECTRON MICROSCOPY

Resolution

5.17 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

9N70|1|L1|U|249

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N70_005 not in the Motif Atlas

Homologous match to HL_9PN5_082

Geometric discrepancy: 0.2305

The information below is about HL_9PN5_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9N70|1|L1|G|243
9N70|1|L1|A|244
9N70|1|L1|U|245
9N70|1|L1|G|246
9N70|1|L1|A|247
9N70|1|L1|U|248
9N70|1|L1|U|249
9N70|1|L1|C|250

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L4

40S ribosomal protein S4-A

Chain LD

40S ribosomal protein S11-A