HL_9N70_010

3D structure

PDB id

9N70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State E

Experimental method

ELECTRON MICROSCOPY

Resolution

5.17 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

9N70|1|L1|A|452

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N70_010 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.2977

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9N70|1|L1|U|450
9N70|1|L1|A|451
9N70|1|L1|A|452
9N70|1|L1|U|453
9N70|1|L1|U|454
9N70|1|L1|C|455
9N70|1|L1|A|456

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L4

40S ribosomal protein S4-A

Chain LF

40S ribosomal protein S24-A

Chain SP

U3 small nucleolar RNA-associated protein 20