HL_9N70_021

3D structure

PDB id

9N70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State E

Experimental method

ELECTRON MICROSCOPY

Resolution

5.17 Å

Loop

Sequence

GUACACAC

Length

8 nucleotides

Bulged bases

9N70|1|L1|U|1630, 9N70|1|L1|C|1632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N70_021 not in the Motif Atlas

Geometric match to HL_8K1E_001

Geometric discrepancy: 0.2942

The information below is about HL_8K1E_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97725.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9N70|1|L1|G|1629
9N70|1|L1|U|1630
9N70|1|L1|A|1631
9N70|1|L1|C|1632
9N70|1|L1|A|1633
9N70|1|L1|C|1634
9N70|1|L1|A|1635
9N70|1|L1|C|1636

Current chains

Chain L1

18S rRNA

Nearby chains

Chain LO

Periodic tryptophan protein 2

Chain LQ

U3 small nucleolar RNA-associated protein 12

Chain LR

U3 small nucleolar RNA-associated protein 13

Chain NA

U3 small nucleolar RNA-associated protein MPP10