HL_9N9J_060

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9N9J|1|L5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N9J_060 not in the Motif Atlas

Homologous match to HL_9PN5_060

Geometric discrepancy: 0.0969

The information below is about HL_9PN5_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

9N9J|1|L5|A|4474
9N9J|1|L5|G|4475
9N9J|1|L5|C|4476
9N9J|1|L5|A|4477
9N9J|1|L5|G|4478
9N9J|1|L5|A|4479
9N9J|1|L5|A|4480
9N9J|1|L5|U|4481

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain Lm

Ubiquitin-60S ribosomal protein L40