HL_9NDP_022
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GCCGCGCC
- Length
- 8 nucleotides
- Bulged bases
- 9NDP|1|5|C|1481, 9NDP|1|5|G|1482, 9NDP|1|5|C|1485
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NDP_022 not in the Motif Atlas
- Geometric match to HL_6VMY_004
- Geometric discrepancy: 0.2752
- The information below is about HL_6VMY_004
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_34080.1
- Basepair signature
- cWW-cWH-F
- Number of instances in this motif group
- 4
Unit IDs
9NDP|1|5|G|1479
9NDP|1|5|C|1480
9NDP|1|5|C|1481
9NDP|1|5|G|1482
9NDP|1|5|C|1483
9NDP|1|5|G|1484
9NDP|1|5|C|1485
9NDP|1|5|C|1486
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- eL13
- Chain i
- 60S ribosomal protein L36
Coloring options: