HL_9NDP_024

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

9NDP|1|5|U|1596, 9NDP|1|5|A|1600, 9NDP|1|5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|5|A|1593
9NDP|1|5|C|1594
9NDP|1|5|G|1595
9NDP|1|5|U|1596
9NDP|1|5|G|1597
9NDP|1|5|C|1598
9NDP|1|5|G|1599
9NDP|1|5|A|1600
9NDP|1|5|A|1601
9NDP|1|5|U|1602

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain NB

Myristoylated alanine-rich C-kinase substrate,X-box-binding protein 1, luminal form

Chain P

Large ribosomal subunit protein uL22

Chain j

Ribosomal protein L37