HL_9NDP_044
3D structure
- PDB id
- 9NDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGUUCC
- Length
- 6 nucleotides
- Bulged bases
- 9NDP|1|5|G|2706, 9NDP|1|5|U|2707, 9NDP|1|5|U|2708
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NDP_044 not in the Motif Atlas
- Geometric match to HL_6MSF_001
- Geometric discrepancy: 0.2069
- The information below is about HL_6MSF_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_90436.6
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 50
Unit IDs
9NDP|1|5|G|2705
9NDP|1|5|G|2706
9NDP|1|5|U|2707
9NDP|1|5|U|2708
9NDP|1|5|C|2709
9NDP|1|5|C|2710
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain EF
- Isoform 2 of Transcription factor BTF3
- Chain EG
- Nascent polypeptide-associated complex subunit alpha
- Chain NA
- Glycylpeptide N-tetradecanoyltransferase 2
- Chain R
- Ribosomal protein L19
- Chain U
- eL22
Coloring options: