HL_9NDP_064

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UUUGGGUUUUA

Length

11 nucleotides

Bulged bases

9NDP|1|5|U|4354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NDP_064 not in the Motif Atlas

Homologous match to HL_8GLP_065

Geometric discrepancy: 0.3138

The information below is about HL_8GLP_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14856.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9NDP|1|5|U|4352
9NDP|1|5|U|4353
9NDP|1|5|U|4354
9NDP|1|5|G|4355
9NDP|1|5|G|4356
9NDP|1|5|G|4357
9NDP|1|5|U|4358
9NDP|1|5|U|4359
9NDP|1|5|U|4360
9NDP|1|5|U|4361
9NDP|1|5|A|4362

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain a

60S ribosomal protein L27a

Chain i

60S ribosomal protein L36

Chain o

Ribosomal protein L36a