HL_9NDP_065

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NDP_065 not in the Motif Atlas

Homologous match to HL_9PN5_059

Geometric discrepancy: 0.2548

The information below is about HL_9PN5_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.4

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9NDP|1|5|C|4417
9NDP|1|5|G|4418
9NDP|1|5|U|4419
9NDP|1|5|U|4420
9NDP|1|5|C|4421
9NDP|1|5|A|4422
9NDP|1|5|U|4423
9NDP|1|5|A|4424
9NDP|1|5|G|4425

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain m

Ubiquitin-ribosomal protein eL40 fusion protein