HL_9NDP_066

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9NDP|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NDP_066 not in the Motif Atlas

Homologous match to HL_8GLP_067

Geometric discrepancy: 0.1288

The information below is about HL_8GLP_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9NDP|1|5|A|4474
9NDP|1|5|G|4475
9NDP|1|5|C|4476
9NDP|1|5|A|4477
9NDP|1|5|G|4478
9NDP|1|5|A|4479
9NDP|1|5|A|4480
9NDP|1|5|U|4481

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain m

Ubiquitin-ribosomal protein eL40 fusion protein