HL_9NDP_087

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

9NDP|1|K|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NDP_087 not in the Motif Atlas

Homologous match to HL_9PN5_082

Geometric discrepancy: 0.2864

The information below is about HL_9PN5_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9NDP|1|K|G|288
9NDP|1|K|G|289
9NDP|1|K|U|290
9NDP|1|K|G|291
9NDP|1|K|A|292
9NDP|1|K|C|293
9NDP|1|K|U|294
9NDP|1|K|C|295

Current chains

Chain K

18S rRNA

Nearby chains

Chain EE

Ribosomal protein S11

Chain x

eS4

Chain z

40S ribosomal protein S6