HL_9NDP_093

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9NDP|1|K|A|500, 9NDP|1|K|C|501, 9NDP|1|K|C|502, 9NDP|1|K|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NDP_093 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.2886

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9NDP|1|K|C|498
9NDP|1|K|G|499
9NDP|1|K|A|500
9NDP|1|K|C|501
9NDP|1|K|C|502
9NDP|1|K|C|503
9NDP|1|K|G|504

Current chains

Chain K

18S rRNA

Nearby chains

Chain NN

Small ribosomal subunit protein eS24

Chain x

eS4