HL_9NDP_100

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|K|A|957
9NDP|1|K|G|958
9NDP|1|K|G|959
9NDP|1|K|U|960
9NDP|1|K|G|961
9NDP|1|K|A|962
9NDP|1|K|A|963
9NDP|1|K|A|964
9NDP|1|K|U|965
9NDP|1|K|U|966

Current chains

Chain K

18S rRNA

Nearby chains

Chain 4

mRNA

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain MM

Small ribosomal subunit protein uS11

Chain y

Ribosomal protein S5