HL_9NJF_011

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9NJF|1|R1|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_011 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.124

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9NJF|1|R1|A|382
9NJF|1|R1|C|383
9NJF|1|R1|A|384
9NJF|1|R1|C|385
9NJF|1|R1|G|386
9NJF|1|R1|U|387
9NJF|1|R1|G|388
9NJF|1|R1|G|389
9NJF|1|R1|U|390
9NJF|1|R1|A|391
9NJF|1|R1|U|392

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28