HL_9NJF_047

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAACUAUAACG

Length

13 nucleotides

Bulged bases

9NJF|1|R1|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_047 not in the Motif Atlas

Geometric match to HL_8P9A_160

Geometric discrepancy: 0.3058

The information below is about HL_8P9A_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70658.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9NJF|1|R1|C|1909
9NJF|1|R1|G|1910
9NJF|1|R1|U|1911
9NJF|1|R1|A|1912
9NJF|1|R1|A|1913
9NJF|1|R1|C|1914
9NJF|1|R1|U|1915
9NJF|1|R1|A|1916
9NJF|1|R1|U|1917
9NJF|1|R1|A|1918
9NJF|1|R1|A|1919
9NJF|1|R1|C|1920
9NJF|1|R1|G|1921

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain R3

Small subunit ribosomal RNA; SSU rRNA

Chain T

Transfer RNA; tRNA