HL_9NJF_095

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9NJF|1|R3|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_095 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.1573

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9NJF|1|R3|G|1089
9NJF|1|R3|U|1090
9NJF|1|R3|U|1091
9NJF|1|R3|A|1092
9NJF|1|R3|A|1093
9NJF|1|R3|G|1094
9NJF|1|R3|U|1095
9NJF|1|R3|C|1096

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain sg

30S ribosomal protein S7

Chain su

Small ribosomal subunit protein bS21