HL_9NJV_013

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

9NJV|1|R1|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_013 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.2428

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

9NJV|1|R1|C|487
9NJV|1|R1|G|488
9NJV|1|R1|G|489
9NJV|1|R1|C|490
9NJV|1|R1|G|491
9NJV|1|R1|A|492
9NJV|1|R1|G|493

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 22

Large ribosomal subunit protein uL22