HL_9NJV_024

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

9NJV|1|R1|U|958, 9NJV|1|R1|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_024 not in the Motif Atlas

Geometric match to HL_7QR8_003

Geometric discrepancy: 0.2156

The information below is about HL_7QR8_003

Detailed Annotation

GNRA with extra cWH

Broad Annotation

GNRA with extra cWH

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9NJV|1|R1|G|954
9NJV|1|R1|U|955
9NJV|1|R1|G|956
9NJV|1|R1|C|957
9NJV|1|R1|U|958
9NJV|1|R1|A|959
9NJV|1|R1|A|960
9NJV|1|R1|C|961
9NJV|1|R1|G|962
9NJV|1|R1|U|963

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L16

Chain R2

5S ribosomal RNA; 5S rRNA