HL_9NJV_029

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_029 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.1655

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

9NJV|1|R1|G|1281
9NJV|1|R1|U|1282
9NJV|1|R1|G|1283
9NJV|1|R1|A|1284
9NJV|1|R1|A|1285
9NJV|1|R1|A|1286
9NJV|1|R1|A|1287
9NJV|1|R1|G|1288
9NJV|1|R1|C|1289

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 17

Large ribosomal subunit protein bL17

Chain 22

Large ribosomal subunit protein uL22

Chain 32

50S ribosomal protein L32