HL_9NJV_033

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9NJV|1|R1|A|1453, 9NJV|1|R1|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_033 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.1701

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9NJV|1|R1|C|1451
9NJV|1|R1|G|1452
9NJV|1|R1|A|1453
9NJV|1|R1|C|1454
9NJV|1|R1|G|1455
9NJV|1|R1|G|1456
9NJV|1|R1|U|1457
9NJV|1|R1|U|1458
9NJV|1|R1|G|1459

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 17

Large ribosomal subunit protein bL17