HL_9NJV_058

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9NJV|1|R1|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_058 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1077

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

9NJV|1|R1|U|2528
9NJV|1|R1|G|2529
9NJV|1|R1|A|2530
9NJV|1|R1|A|2531
9NJV|1|R1|G|2532
9NJV|1|R1|U|2533
9NJV|1|R1|A|2534
9NJV|1|R1|G|2535

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 36

50S ribosomal protein L36

Chain 6

Large ribosomal subunit protein uL6