3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
9NJV|1|R1|G|2751, 9NJV|1|R1|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9NJV_063 not in the Motif Atlas
Homologous match to HL_5J7L_199
Geometric discrepancy: 0.121
The information below is about HL_5J7L_199
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

9NJV|1|R1|C|2745
9NJV|1|R1|U|2746
9NJV|1|R1|G|2747
9NJV|1|R1|A|2748
9NJV|1|R1|A|2749
9NJV|1|R1|A|2750
9NJV|1|R1|G|2751
9NJV|1|R1|C|2752
9NJV|1|R1|A|2753
9NJV|1|R1|U|2754
9NJV|1|R1|C|2755
9NJV|1|R1|U|2756
9NJV|1|R1|A|2757
9NJV|1|R1|A|2758
9NJV|1|R1|G|2759

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 13
Large ribosomal subunit protein uL13
Chain 36
50S ribosomal protein L36
Chain 6
Large ribosomal subunit protein uL6

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.144 s
Application loaded.