HL_9NJV_089

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

9NJV|1|R3|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_089 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1203

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9NJV|1|R3|G|963
9NJV|1|R3|A|964
9NJV|1|R3|U|965
9NJV|1|R3|G|966
9NJV|1|R3|C|967
9NJV|1|R3|A|968
9NJV|1|R3|A|969
9NJV|1|R3|C|970
9NJV|1|R3|G|971
9NJV|1|R3|C|972

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain T

Transfer RNA; tRNA

Chain si

Small ribosomal subunit protein uS9

Chain sj

30S ribosomal protein S10