HL_9NKL_010

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9NKL|1|R1|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NKL_010 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.3264

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9NKL|1|R1|A|382
9NKL|1|R1|C|383
9NKL|1|R1|A|384
9NKL|1|R1|C|385
9NKL|1|R1|G|386
9NKL|1|R1|U|387
9NKL|1|R1|G|388
9NKL|1|R1|G|389
9NKL|1|R1|U|390
9NKL|1|R1|A|391
9NKL|1|R1|U|392

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28