HL_9NLB_004

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAUCCAUAG

Length

12 nucleotides

Bulged bases

9NLB|1|R1|C|163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLB_004 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.2671

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9NLB|1|R1|C|157
9NLB|1|R1|U|158
9NLB|1|R1|G|159
9NLB|1|R1|A|160
9NLB|1|R1|A|161
9NLB|1|R1|U|162
9NLB|1|R1|C|163
9NLB|1|R1|C|164
9NLB|1|R1|A|165
9NLB|1|R1|U|166
9NLB|1|R1|A|167
9NLB|1|R1|G|168

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28