HL_9NLB_010

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9NLB|1|R1|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLB_010 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.3151

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9NLB|1|R1|A|382
9NLB|1|R1|C|383
9NLB|1|R1|A|384
9NLB|1|R1|C|385
9NLB|1|R1|G|386
9NLB|1|R1|U|387
9NLB|1|R1|G|388
9NLB|1|R1|G|389
9NLB|1|R1|U|390
9NLB|1|R1|A|391
9NLB|1|R1|U|392

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28