HL_9NLH_005

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLH_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1665

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9NLH|1|R1|U|158
9NLH|1|R1|G|159
9NLH|1|R1|A|160
9NLH|1|R1|A|161
9NLH|1|R1|U|162
9NLH|1|R1|C|163
9NLH|1|R1|C|164
9NLH|1|R1|A|165
9NLH|1|R1|U|166
9NLH|1|R1|A|167
9NLH|1|R1|G|168

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28