HL_9NLJ_010

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9NLJ|1|R1|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLJ_010 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1625

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9NLJ|1|R1|A|382
9NLJ|1|R1|C|383
9NLJ|1|R1|A|384
9NLJ|1|R1|C|385
9NLJ|1|R1|G|386
9NLJ|1|R1|U|387
9NLJ|1|R1|G|388
9NLJ|1|R1|G|389
9NLJ|1|R1|U|390
9NLJ|1|R1|A|391
9NLJ|1|R1|U|392

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28