HL_9NLQ_011

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9NLQ|1|R1|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLQ_011 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1273

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9NLQ|1|R1|A|382
9NLQ|1|R1|C|383
9NLQ|1|R1|A|384
9NLQ|1|R1|C|385
9NLQ|1|R1|G|386
9NLQ|1|R1|U|387
9NLQ|1|R1|G|388
9NLQ|1|R1|G|389
9NLQ|1|R1|U|390
9NLQ|1|R1|A|391
9NLQ|1|R1|U|392

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L28