HL_9NLQ_047
3D structure
- PDB id
- 9NLQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 9NLQ|1|R1|A|1913, 9NLQ|1|R1|C|1914, 9NLQ|1|R1|U|1917
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NLQ_047 not in the Motif Atlas
- Homologous match to HL_9DFE_046
- Geometric discrepancy: 0.4777
- The information below is about HL_9DFE_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9NLQ|1|R1|G|1910
9NLQ|1|R1|U|1911
9NLQ|1|R1|A|1912
9NLQ|1|R1|A|1913
9NLQ|1|R1|C|1914
9NLQ|1|R1|U|1915
9NLQ|1|R1|A|1916
9NLQ|1|R1|U|1917
9NLQ|1|R1|A|1918
9NLQ|1|R1|A|1919
9NLQ|1|R1|C|1920
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain R3
- Small subunit ribosomal RNA; SSU rRNA
- Chain T
- Transfer RNA; tRNA
Coloring options: