HL_9NLQ_088
3D structure
- PDB id
- 9NLQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 9NLQ|1|R3|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NLQ_088 not in the Motif Atlas
- Homologous match to HL_5J7L_017
- Geometric discrepancy: 0.124
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9NLQ|1|R3|G|786
9NLQ|1|R3|A|787
9NLQ|1|R3|U|788
9NLQ|1|R3|U|789
9NLQ|1|R3|A|790
9NLQ|1|R3|G|791
9NLQ|1|R3|A|792
9NLQ|1|R3|U|793
9NLQ|1|R3|A|794
9NLQ|1|R3|C|795
9NLQ|1|R3|C|796
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain M
- mRNA
- Chain R1
- Large subunit ribosomal RNA; LSU rRNA
- Chain T
- Transfer RNA; tRNA
- Chain sk
- Small ribosomal subunit protein uS11
- Chain su
- Small ribosomal subunit protein bS21
Coloring options: