HL_9NLQ_104
3D structure
- PDB id
- 9NLQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGCCUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 9NLQ|1|T|U|17, 9NLQ|1|T|G|18, 9NLQ|1|T|G|19, 9NLQ|1|T|H2U|20
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NLQ_104 not in the Motif Atlas
- Homologous match to HL_5WT1_001
- Geometric discrepancy: 0.504
- The information below is about HL_5WT1_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_09260.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9NLQ|1|T|C|12
9NLQ|1|T|A|13
9NLQ|1|T|G|14
9NLQ|1|T|C|15
9NLQ|1|T|C|16
9NLQ|1|T|U|17
9NLQ|1|T|G|18
9NLQ|1|T|G|19
9NLQ|1|T|H2U|20
9NLQ|1|T|A|21
9NLQ|1|T|G|22
Current chains
- Chain T
- tRNA
Nearby chains
- Chain R1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- Probable ATP-binding protein YbiT
Coloring options: