HL_9NLS_044

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

9NLS|1|R1|A|1780, 9NLS|1|R1|U|1781, 9NLS|1|R1|U|1782, 9NLS|1|R1|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NLS_044 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1031

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

9NLS|1|R1|U|1777
9NLS|1|R1|U|1778
9NLS|1|R1|U|1779
9NLS|1|R1|A|1780
9NLS|1|R1|U|1781
9NLS|1|R1|U|1782
9NLS|1|R1|A|1783
9NLS|1|R1|A|1784
9NLS|1|R1|A|1785
9NLS|1|R1|A|1786
9NLS|1|R1|A|1787

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 34

50S ribosomal protein L34