3D structure

PDB id
9NLS (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
9NLS|1|R3|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9NLS_087 not in the Motif Atlas
Homologous match to HL_5J7L_017
Geometric discrepancy: 0.1377
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

9NLS|1|R3|G|786
9NLS|1|R3|A|787
9NLS|1|R3|U|788
9NLS|1|R3|U|789
9NLS|1|R3|A|790
9NLS|1|R3|G|791
9NLS|1|R3|A|792
9NLS|1|R3|U|793
9NLS|1|R3|A|794
9NLS|1|R3|C|795
9NLS|1|R3|C|796

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain M
mRNA
Chain R1
Large subunit ribosomal RNA; LSU rRNA
Chain T
Transfer RNA; tRNA
Chain sk
Small ribosomal subunit protein uS11
Chain su
Small ribosomal subunit protein bS21

Coloring options:


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