HL_9NO7_030

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

9NO7|1|A|G|1325, 9NO7|1|A|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NO7_030 not in the Motif Atlas

Geometric match to HL_7A0S_033

Geometric discrepancy: 0.0685

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9NO7|1|A|G|1324
9NO7|1|A|G|1325
9NO7|1|A|U|1326
9NO7|1|A|C|1327
9NO7|1|A|G|1328
9NO7|1|A|U|1329
9NO7|1|A|C|1330

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L17

Chain W

50S ribosomal protein L22