HL_9NO7_039

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

9NO7|1|A|U|1739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NO7_039 not in the Motif Atlas

Geometric match to HL_9DFE_041

Geometric discrepancy: 0.203

The information below is about HL_9DFE_041

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9NO7|1|A|U|1720
9NO7|1|A|G|1721
9NO7|1|A|A|1722
9NO7|1|A|U|1739
9NO7|1|A|G|1740
9NO7|1|A|A|1741
9NO7|1|A|G|1742

Current chains

Chain A

23S Ribosomal RNA

Nearby chains