HL_9NO7_041

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

9NO7|1|A|A|1780, 9NO7|1|A|C|1781, 9NO7|1|A|C|1782, 9NO7|1|A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NO7_041 not in the Motif Atlas

Geometric match to HL_5J7L_178

Geometric discrepancy: 0.0618

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

9NO7|1|A|U|1777
9NO7|1|A|U|1778
9NO7|1|A|U|1779
9NO7|1|A|A|1780
9NO7|1|A|C|1781
9NO7|1|A|C|1782
9NO7|1|A|A|1783
9NO7|1|A|A|1784
9NO7|1|A|A|1785
9NO7|1|A|A|1786
9NO7|1|A|A|1787

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain D

50S ribosomal protein L2

Chain W

50S ribosomal protein L22