HL_9NPY_001
3D structure
- PDB id
- 9NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GAC(B8N)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 9NPY|1|i|A|1253
- QA status
- Modified nucleotides: B8N
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NPY_001 not in the Motif Atlas
- Geometric match to HL_8P9A_215
- Geometric discrepancy: 0.0805
- The information below is about HL_8P9A_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9NPY|1|i|G|1245
9NPY|1|i|A|1246
9NPY|1|i|C|1247
9NPY|1|i|B8N|1248
9NPY|1|i|C|1249
9NPY|1|i|A|1250
9NPY|1|i|A|1251
9NPY|1|i|C|1252
9NPY|1|i|A|1253
9NPY|1|i|C|1254
Current chains
- Chain i
- 18S ribosomal RNA
Nearby chains
- Chain Q
- 40S ribosomal protein uS9, RPS16
- Chain S
- 40S ribosomal protein uS13, RPS18
- Chain U
- 40S ribosomal protein uS10, RPS20
- Chain d
- 40S ribosomal protein uS14, RPS29
Coloring options: