HL_9NPY_006

3D structure

PDB id

9NPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NPY_006 not in the Motif Atlas

Geometric match to HL_8CRE_221

Geometric discrepancy: 0.1923

The information below is about HL_8CRE_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

9NPY|1|i|C|1460
9NPY|1|i|G|1461
9NPY|1|i|U|1462
9NPY|1|i|U|1463
9NPY|1|i|C|1464
9NPY|1|i|A|1465
9NPY|1|i|G|1466

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein eS17, RPS17

Chain c

40S ribosomal protein eS28, RPS28