HL_9NPY_008
3D structure
- PDB id
- 9NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 9NPY|1|i|U|1621, 9NPY|1|i|U|1622, 9NPY|1|i|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NPY_008 not in the Motif Atlas
- Geometric match to HL_8P9A_222
- Geometric discrepancy: 0.1341
- The information below is about HL_8P9A_222
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9NPY|1|i|A|1614
9NPY|1|i|U|1615
9NPY|1|i|U|1616
9NPY|1|i|G|1617
9NPY|1|i|C|1618
9NPY|1|i|A|1619
9NPY|1|i|A|1620
9NPY|1|i|U|1621
9NPY|1|i|U|1622
9NPY|1|i|A|1623
9NPY|1|i|U|1624
9NPY|1|i|U|1625
Current chains
- Chain i
- 18S ribosomal RNA
Nearby chains
- Chain O
- 40S ribosomal protein uS19, RPS15
- Chain S
- 40S ribosomal protein uS13, RPS18
- Chain T
- 40S ribosomal protein eS19, RPS19
- Chain d
- 40S ribosomal protein uS14, RPS29
Coloring options: