HL_9NPY_009
3D structure
- PDB id
- 9NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 9NPY|1|i|C|1660, 9NPY|1|i|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9NPY_009 not in the Motif Atlas
- Geometric match to HL_8CRE_224
- Geometric discrepancy: 0.3205
- The information below is about HL_8CRE_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01609.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 18
Unit IDs
9NPY|1|i|G|1658
9NPY|1|i|U|1659
9NPY|1|i|C|1660
9NPY|1|i|A|1661
9NPY|1|i|U|1662
9NPY|1|i|A|1663
9NPY|1|i|A|1664
9NPY|1|i|G|1665
9NPY|1|i|C|1666
Current chains
- Chain i
- 18S ribosomal RNA
Nearby chains
- Chain Q
- 40S ribosomal protein uS9, RPS16
- Chain T
- 40S ribosomal protein eS19, RPS19
- Chain U
- 40S ribosomal protein uS10, RPS20
- Chain d
- 40S ribosomal protein uS14, RPS29
Coloring options: