HL_9O3K_207

3D structure

PDB id

9O3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

9O3K|1|2x|C|16, 9O3K|1|2x|G|18, 9O3K|1|2x|G|19, 9O3K|1|2x|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3K_207 not in the Motif Atlas

Geometric match to HL_9DFC_103

Geometric discrepancy: 0.1579

The information below is about HL_9DFC_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9O3K|1|2x|C|13
9O3K|1|2x|A|14
9O3K|1|2x|G|15
9O3K|1|2x|C|16
9O3K|1|2x|C|17
9O3K|1|2x|U|17|||A
9O3K|1|2x|G|18
9O3K|1|2x|G|19
9O3K|1|2x|U|20
9O3K|1|2x|A|21
9O3K|1|2x|G|22

Current chains

Chain 2x

P-site Peptidyl-tRNA fMAC-tRNAcys RNA-part

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2G

50S ribosomal protein L5